.. muon documentation master file, created by
   sphinx-quickstart on Sun Sep 13 02:51:46 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.



API reference
=============

.. contents:: :local:
   :depth: 3

.. toctree::
   :maxdepth: 10

   *



Multimodal omics
----------------

.. module: muon
.. autosummary::
   :toctree: generated
   :recursive:

   muon.MuData
   muon.pp
   muon.tl
   muon.pl
   muon.utils


ATAC submodule
--------------

.. module:: muon.atac
.. currentmodule:: muon

.. autosummary::
   :toctree: generated

   atac.pp
   atac.tl
   atac.pl


Protein submodule
-----------------

.. module:: muon.prot
.. currentmodule:: muon

.. autosummary::
    :toctree: generated

    prot.pp

Input/Output
------------

.. automodsumm:: muon
   :functions-only:
   :toctree: generated