muon.atac.tl.lsi
muon.atac.tl.lsi#
- muon.atac.tl.lsi(data: Union[anndata._core.anndata.AnnData, mudata._core.mudata.MuData], scale_embeddings=True, n_comps=50)#
Run Latent Semantic Indexing
- Parameters
data – AnnData object or MuData object with ‘atac’ modality
scale_embeddings (bool (default: True)) – Scale embeddings to zero mean and unit variance
n_comps (int (default: 50)) – Number of components to calculate with SVD