muon.atac.tl.scan_sequences
muon.atac.tl.scan_sequences#
- muon.atac.tl.scan_sequences(sequences, motif_scanner=None, matrices=None, motifs=None, motif_meta: Optional[pandas.core.frame.DataFrame] = None, background: int = 4, pvalue: float = 0.0001, max_hits: int = 10)#
Scan sequences (e.g. peaks) searching for motifs (JASPAR by default).
- Parameters
data – AnnData object with peak counts or multimodal MuData object with ‘atac’ modality.
- Returns
Pandas dataframe with matched motifs and respective sequence IDs.
- Return type
matches