muon.tl

Functions

ica(data[, basis, n_components, ...])	Run Independent component analysis
leiden(data[, resolution, mod_weights, ...])	Cluster cells using the Leiden algorithm.
louvain(data[, resolution, mod_weights, ...])	Cluster cells using the Louvain algorithm.
mofa(data[, groups_label, use_raw, ...])	Run Multi-Omics Factor Analysis
snf(mdata[, n_neighbors, neighbor_keys, ...])	Similarity network fusion (SNF)
umap(mdata[, min_dist, spread, ...])	Embed the multimodal neighborhood graph using UMAP (McInnes et al, 2018).