initialise_default_files
initialise_default_files#
- muon.initialise_default_files(data: Union[anndata._core.anndata.AnnData, mudata._core.mudata.MuData], path: Union[str, pathlib.Path])#
Locate default files for ATAC-seq
attempt to locate peak annotation file (atac_peak_annotation.tsv)
attempt to parse add peak annotation and store it as a DataFrame
attempt to locate fragments file (atac_fragments.tsv.gz)