dotplot(data, var_names[, groupby, average, ...])


embedding(data, basis[, color, average, ...])

Scatter plot in the define basis

fragment_histogram(data[, region, groupby, ...])

Plot Histogram of Fragment lengths within specified region. :param data: AnnData object with peak counts or multimodal MuData object with 'atac' modality. :param region: Region to plot. Specified with the format chr1:1-2000000 or`chr1-1-2000000`. :param groupby: Column name(s) of .obs slot of the AnnData object according to which the plot is split. :param barcodes: Column name of .obs slot of the AnnData object with barcodes corresponding to the ones in the fragments file. :param show: Show the plot, do not return axis. :param save: If True or a str, save the figure. A string is appended to the default filename. Infer the filetype if ending on {'.pdf', '.png', '.svg'}.

lsi(data, **kwargs)

Scatter plot for latent semantic indexing components

mofa(mdata, **kwargs)

Scatter plot in MOFA factors coordinates

pca(data, **kwargs)

Scatter plot for principle components

tss_enrichment(data[, color, title, ax])

Plot relative enrichment scores around a TSS.

umap(data, **kwargs)

Scatter plot in UMAP space