muon.atac.pl

Functions

dotplot(data, var_names[, groupby, average, ...])	Dotplot
embedding(data, basis[, color, average, ...])	Scatter plot in the define basis
fragment_histogram(data[, region, groupby, ...])	Plot Histogram of Fragment lengths within specified region. :param data: AnnData object with peak counts or multimodal MuData object with 'atac' modality. :param region: Region to plot. Specified with the format chr1:1-2000000 or`chr1-1-2000000`. :param groupby: Column name(s) of .obs slot of the AnnData object according to which the plot is split. :param barcodes: Column name of .obs slot of the AnnData object with barcodes corresponding to the ones in the fragments file. :param show: Show the plot, do not return axis. :param save: If True or a str, save the figure. A string is appended to the default filename. Infer the filetype if ending on {'.pdf', '.png', '.svg'}.
lsi(data, **kwargs)	Scatter plot for latent semantic indexing components
mofa(mdata, **kwargs)	Scatter plot in MOFA factors coordinates
pca(data, **kwargs)	Scatter plot for principle components
tss_enrichment(data[, color, title, ax])	Plot relative enrichment scores around a TSS.
umap(data, **kwargs)	Scatter plot in UMAP space