muon.atac.tl.locate_genome

Contents

muon.atac.tl.locate_genome#

muon.atac.tl.locate_genome(data: AnnData | MuData, fasta_file: str)#

Add path to the FASTA file with genome to .uns[“files”][“genome”]

Genome sequences can be downloaded from GENCODE:

Parameters:
  • data – AnnData object with peak counts or multimodal MuData object with ‘atac’ modality.

  • fasta_file – A path to the file (e.g. ./atac_fragments.tsv.gz).