muon.atac.tl.scan_sequences

muon.atac.tl.scan_sequences(sequences, motif_scanner=None, matrices=None, motifs=None, motif_meta: DataFrame = None, background: int = 4, pvalue: float = 0.0001, max_hits: int = 10)

Scan sequences (e.g. peaks) searching for motifs (JASPAR by default).

Parameters:

data – AnnData object with peak counts or multimodal MuData object with ‘atac’ modality.

Returns:

Pandas dataframe with matched motifs and respective sequence IDs.

Return type:

matches