muon.atac.tl.lsi

muon.atac.tl.lsi(data: AnnData | MuData, scale_embeddings=True, n_comps=50)

Run Latent Semantic Indexing

Parameters:

• data – AnnData object or MuData object with ‘atac’ modality

• scale_embeddings (bool (default: True)) – Scale embeddings to zero mean and unit variance

• n_comps (int (default: 50)) – Number of components to calculate with SVD