muon.atac.pp.scopen(data: Union[anndata._core.anndata.AnnData, mudata._core.mudata.MuData], n_components: int = 30, max_iter: int = 500, min_rho: float = 0.0, max_rho: float = 0.5, alpha: int = 1, verbose: bool = False)#

Run scOpen (Li et al., 2019, on the count matrix

This function follows the original implementation of the main method ( adapting it for AnnDaata and MuData formats.


data – AnnData object with peak counts or multimodal MuData object with ‘atac’ modality.