muon.prot.pp.clr

muon.prot.pp.clr(adata: AnnData, inplace: bool = True, axis: int = 0) → None | AnnData

Apply the centered log ratio (CLR) transformation to normalize counts in adata.X.

Parameters:

• data – AnnData object with protein expression counts.

• inplace – Whether to update adata.X inplace.

• axis – Axis across which CLR is performed.