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read_10x_h5

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read_10x_h5#

muon.read_10x_h5(filename: PathLike, extended: bool = True, *args, **kwargs) → MuData#

Read data from 10X Genomics-formatted HDF5 file

This function uses scanpy.read_10x_h5() internally and patches its behaviour to: - attempt to read interval field for features; - attempt to locate peak annotation file and add peak annotation; - attempt to locate fragments file.

Parameters:

  • filename (str) – Path to 10X HDF5 file (.h5)

  • extended (bool, optional (default: True)) – Perform extended functionality automatically such as locating peak annotation and fragments files.

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