embedding(data, basis[, color, use_raw, layer])

Scatter plot for .obs

histogram(data, keys[, groupby, show, save])

Plot Histogram of Fragment lengths within specified region. :param data: AnnData object with peak counts or multimodal MuData object. :param keys: Keys to plot. :param groupby: Column name(s) of .obs slot of the AnnData object according to which the plot is split. :param show: Show the plot, do not return axis. :param save: If True or a str, save the figure. A string is appended to the default filename. Infer the filetype if ending on {'.pdf', '.png', '.svg'}.

mofa(mdata, **kwargs)

Scatter plot in MOFA factors coordinates

mofa_loadings(mdata[, factors, ...])

Rank genes according to contributions to MOFA factors.

scatter(data[, x, y, color, use_raw, layers])

Scatter plot along observations or variables axes.

umap(mdata, **kwargs)

UMAP Scatter plot