muon.atac.tl.locate_fragments#
- muon.atac.tl.locate_fragments(data: AnnData | MuData, fragments: str, return_fragments: bool = False)#
Parse fragments file and add a variable to access it to the .uns[“files”][“fragments”]
Fragments file is never read to memory, and connection to the file is closed upon function completion.
- Parameters:
data – AnnData object with peak counts or multimodal MuData object with ‘atac’ modality.
fragments – A path to the compressed tab-separated fragments file (e.g. atac_fragments.tsv.gz).
return_fragments – If return the Tabix connection the fragments file. False by default.