muon.atac.tl.initialise_default_files

muon.atac.tl.initialise_default_files#

muon.atac.tl.initialise_default_files(data: AnnData | MuData, path: str | Path)#

Locate default files for ATAC-seq

  • attempt to locate peak annotation file (atac_peak_annotation.tsv)

  • attempt to parse add peak annotation and store it as a DataFrame

  • attempt to locate fragments file (atac_fragments.tsv.gz)