muon.atac.pp

muon.atac.pp#

Functions

binarize(data)

Transform peak counts to the binary matrix (all the non-zero values become 1).

scopen(data[, n_components, max_iter, ...])

Run scOpen (Li et al., 2019, https://doi.org/10.1101/865931) on the count matrix

tfidf(data[, log_tf, log_idf, log_tfidf, ...])

Transform peak counts with TF-IDF (Term Frequency - Inverse Document Frequency).