muon.atac.tl.rank_peaks_groups

muon.atac.tl.rank_peaks_groups#

muon.atac.tl.rank_peaks_groups(data: AnnData | MuData, groupby: str, add_peak_type: bool = False, add_distance: bool = False, **kwargs)#

Rank peaks in clusters groups.

Shorthand for running sc.tl.rank_genes_groups followed by muon.atac.tl.add_genes_peaks_groups.

See sc.tl.rank_genes_groups for details.

Parameters:
  • data (Union[AnnData, MuData]) – AnnData object with peak counts or MuData object with ‘atac’ modality.

  • groupby (str) – The key of the observations grouping to consider.

  • add_peak_type (bool (False by default)) – If to add peak type to the ranked peaks per group

  • add_distance (bool (False by default)) – If to add distance to the ranked peaks per group